structural analysis program pymol Search Results


structural analysis program pymol  (DeLano Scientific)
90
DeLano Scientific structural analysis program pymol
(a) Immunohistochemistry for mutant p53 by PAb240 antibody (indicated by →) on oral cancer sample, (b) Sequence chromatogram showing C>T substitution at 152 position, (c) location of P152 (shown in pink) in 3-D structure of p53 core domain bound <t>to</t> <t>DNA</t> visualized by <t>PyMol</t> (molecular visualization software), (d) Multiple sequence alignment of human TP53 protein sequence across various organism. The P152 residue is indicated by a black arrow, (e) Prevalence of missence mutations in a strecth of 150-155amino acid of p53 analyzed from COSMIC database version 86, (f) Bar plot representation of number and frequency of various missense mutation present at TP53 (P152) loci out of 111 samples available data at COSMIC. The percentage frequency of various amino acid substitutions are shown above the bars. (g) Bar plot representation of number and frequency distribution of TP53 (P152L) mutation occurrence over various cancer tissue type out of 111 samples of P152L mutations. CNS: central nervous system, others: adrenal gland, breast, haematopoietic and lymphoid tissue, liver, lung, pancreas, skin, soft tissue and stomach tissue.
Structural Analysis Program Pymol, supplied by DeLano Scientific, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/structural+analysis+program+pymol/bio_rxiv__475293-55-42-45?v=DeLano+Scientific
Average 90 stars, based on 1 article reviews
structural analysis program pymol - by Bioz Stars, 2026-08
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structural analysis figures generated in pymol  (Schrodinger LLC)
90
Schrodinger LLC structural analysis figures generated in pymol
(a) Immunohistochemistry for mutant p53 by PAb240 antibody (indicated by →) on oral cancer sample, (b) Sequence chromatogram showing C>T substitution at 152 position, (c) location of P152 (shown in pink) in 3-D structure of p53 core domain bound <t>to</t> <t>DNA</t> visualized by <t>PyMol</t> (molecular visualization software), (d) Multiple sequence alignment of human TP53 protein sequence across various organism. The P152 residue is indicated by a black arrow, (e) Prevalence of missence mutations in a strecth of 150-155amino acid of p53 analyzed from COSMIC database version 86, (f) Bar plot representation of number and frequency of various missense mutation present at TP53 (P152) loci out of 111 samples available data at COSMIC. The percentage frequency of various amino acid substitutions are shown above the bars. (g) Bar plot representation of number and frequency distribution of TP53 (P152L) mutation occurrence over various cancer tissue type out of 111 samples of P152L mutations. CNS: central nervous system, others: adrenal gland, breast, haematopoietic and lymphoid tissue, liver, lung, pancreas, skin, soft tissue and stomach tissue.
Structural Analysis Figures Generated In Pymol, supplied by Schrodinger LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/structural+analysis+program+pymol/pmc10387464__41392_2023_1509_MOESM1_ESM-308-8-9?v=Schrodinger+LLC
Average 90 stars, based on 1 article reviews
structural analysis figures generated in pymol - by Bioz Stars, 2026-08
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threedimensional structure analysis pymol 0.99  (DeLano Scientific)
90
DeLano Scientific threedimensional structure analysis pymol 0.99
(a) Immunohistochemistry for mutant p53 by PAb240 antibody (indicated by →) on oral cancer sample, (b) Sequence chromatogram showing C>T substitution at 152 position, (c) location of P152 (shown in pink) in 3-D structure of p53 core domain bound <t>to</t> <t>DNA</t> visualized by <t>PyMol</t> (molecular visualization software), (d) Multiple sequence alignment of human TP53 protein sequence across various organism. The P152 residue is indicated by a black arrow, (e) Prevalence of missence mutations in a strecth of 150-155amino acid of p53 analyzed from COSMIC database version 86, (f) Bar plot representation of number and frequency of various missense mutation present at TP53 (P152) loci out of 111 samples available data at COSMIC. The percentage frequency of various amino acid substitutions are shown above the bars. (g) Bar plot representation of number and frequency distribution of TP53 (P152L) mutation occurrence over various cancer tissue type out of 111 samples of P152L mutations. CNS: central nervous system, others: adrenal gland, breast, haematopoietic and lymphoid tissue, liver, lung, pancreas, skin, soft tissue and stomach tissue.
Threedimensional Structure Analysis Pymol 0.99, supplied by DeLano Scientific, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/structural+analysis+program+pymol/10__1128_slash_jb__00552___09-114-0-8?v=DeLano+Scientific
Average 90 stars, based on 1 article reviews
threedimensional structure analysis pymol 0.99 - by Bioz Stars, 2026-08
90/100 stars
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graphic chemical structure visualization program pymol  (Schrodinger LLC)
90
Schrodinger LLC graphic chemical structure visualization program pymol
(a) Immunohistochemistry for mutant p53 by PAb240 antibody (indicated by →) on oral cancer sample, (b) Sequence chromatogram showing C>T substitution at 152 position, (c) location of P152 (shown in pink) in 3-D structure of p53 core domain bound <t>to</t> <t>DNA</t> visualized by <t>PyMol</t> (molecular visualization software), (d) Multiple sequence alignment of human TP53 protein sequence across various organism. The P152 residue is indicated by a black arrow, (e) Prevalence of missence mutations in a strecth of 150-155amino acid of p53 analyzed from COSMIC database version 86, (f) Bar plot representation of number and frequency of various missense mutation present at TP53 (P152) loci out of 111 samples available data at COSMIC. The percentage frequency of various amino acid substitutions are shown above the bars. (g) Bar plot representation of number and frequency distribution of TP53 (P152L) mutation occurrence over various cancer tissue type out of 111 samples of P152L mutations. CNS: central nervous system, others: adrenal gland, breast, haematopoietic and lymphoid tissue, liver, lung, pancreas, skin, soft tissue and stomach tissue.
Graphic Chemical Structure Visualization Program Pymol, supplied by Schrodinger LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/structural+analysis+program+pymol/pm26799634-63-20-34?v=Schrodinger+LLC
Average 90 stars, based on 1 article reviews
graphic chemical structure visualization program pymol - by Bioz Stars, 2026-08
90/100 stars
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Image Search Results


(a) Immunohistochemistry for mutant p53 by PAb240 antibody (indicated by →) on oral cancer sample, (b) Sequence chromatogram showing C>T substitution at 152 position, (c) location of P152 (shown in pink) in 3-D structure of p53 core domain bound to DNA visualized by PyMol (molecular visualization software), (d) Multiple sequence alignment of human TP53 protein sequence across various organism. The P152 residue is indicated by a black arrow, (e) Prevalence of missence mutations in a strecth of 150-155amino acid of p53 analyzed from COSMIC database version 86, (f) Bar plot representation of number and frequency of various missense mutation present at TP53 (P152) loci out of 111 samples available data at COSMIC. The percentage frequency of various amino acid substitutions are shown above the bars. (g) Bar plot representation of number and frequency distribution of TP53 (P152L) mutation occurrence over various cancer tissue type out of 111 samples of P152L mutations. CNS: central nervous system, others: adrenal gland, breast, haematopoietic and lymphoid tissue, liver, lung, pancreas, skin, soft tissue and stomach tissue.

Journal: bioRxiv

Article Title: Activation of Multiple Signalling Pathways by P152Lp53 Mutant Reveals New Gain-of-function Implicating Tumorigenesis

doi: 10.1101/475293

Figure Lengend Snippet: (a) Immunohistochemistry for mutant p53 by PAb240 antibody (indicated by →) on oral cancer sample, (b) Sequence chromatogram showing C>T substitution at 152 position, (c) location of P152 (shown in pink) in 3-D structure of p53 core domain bound to DNA visualized by PyMol (molecular visualization software), (d) Multiple sequence alignment of human TP53 protein sequence across various organism. The P152 residue is indicated by a black arrow, (e) Prevalence of missence mutations in a strecth of 150-155amino acid of p53 analyzed from COSMIC database version 86, (f) Bar plot representation of number and frequency of various missense mutation present at TP53 (P152) loci out of 111 samples available data at COSMIC. The percentage frequency of various amino acid substitutions are shown above the bars. (g) Bar plot representation of number and frequency distribution of TP53 (P152L) mutation occurrence over various cancer tissue type out of 111 samples of P152L mutations. CNS: central nervous system, others: adrenal gland, breast, haematopoietic and lymphoid tissue, liver, lung, pancreas, skin, soft tissue and stomach tissue.

Article Snippet: To model the location of proline at position 152 of p53, coordinates of the human p53 DNA-binding domain bound to DNA with accession code 1TUP, tumor suppressor p53 complexed with DNA were taken from RCSB ( https://www.rcsb.org ), and analysed with structural analysis program PyMol (DeLano Scientific, Palo Alto, CA)

Techniques: Immunohistochemistry, Mutagenesis, Sequencing, Software, Residue